Sweet cherry production in France has been in decline since the 1980s, influenced by climate change and biological pressures. Traditional selection is long and complex due to the prolonged juvenile stage and the complexity of polygenic traits, but advances in genetic research have identified key markers through quantitative locus mapping (QTL) and genome-wide association studies (GWAS).
However, genotyping by sequencing (GBS) is emerging as a cost-effective solution to analyse high-density SNPs and improve selection strategies.
'Horticulture Research' published in September 2023 a study entitled 'Genome-wide association mapping in a sweet cherry germplasm collection (Prunus avium L.) reveals candidate genes for fruit quality traits'. This study used a germplasm collection of 116 sweet cherry accessions to analyse 23 agronomic fruit quality traits over a period of 2-6 years, showing high phenotypic variation.
Subsequently, SNPs were analysed by GBS, and GWAS studies identified 65 unique SNP-trait associations for eight traits, including candidate genes in phytohormone, calcium and cell wall metabolisms. In order to identify colocalising SNP-trait associations for fruit quality traits, the researchers synthesised the results of this study and nine previous articles, identifying a total of 11 and 12 candidate genes for fruit size and fruit splitting traits.
The study's methodology characterised phenotypic variation, revealing high broad-spectrum heritability for many traits, suggesting a strong genetic component. GBS sequencing produced a rich set of SNPs, facilitating the identification of genetic associations between multiple traits. Analysis of population structure revealed distinct subpopulations, contributing to a deeper understanding of genetic diversity in the collection.
The identified SNP-tract associations, supported by a thorough literature review, improve the understanding of genetic control of fruit quality in sweet cherry. This knowledge is crucial for the development of marker-assisted selection strategies, accelerating selection efforts to meet consumer preferences and producer requirements by addressing the complexity of the genetic architecture of sweet cherry and its impact on fruit quality traits.
Image 1: Pearson correlation matrix of the 23 studied traits.
Read the full article: EurekAlert!
Image: Horticulture Research
31 May 2024
Emilia Muratori, the mayor of Vignola, explained that the concession for the remaining concessionaire will expire in 2025, and at the moment there are no signs of giving up: ‘We will let the cherry season pass and then make a decision on the empty space'.
11 Dec 2023
At Dresden-Pillnitz interspecific crosses and backcrosses have been carried out over the last 20 years. The aims of this breeding program are to develop genotypes with new fruit characteristics and a higher level of resistance to biotic and abiotic stress.
20 Apr 2026
In 2025, Moldova reached a record in sour cherry exports, surpassing domestic consumption, with 55% of output shipped abroad. Rising prices and lack of irrigation are affecting fruit quality, yields and the overall competitiveness of the national cherry supply chain.
20 Apr 2026
In Chile’s cherry sector, oversupply and rising costs are reshaping the market. According to Raimundo Cuevas, not all orchards will survive: higher productivity, new varieties and a redefinition of growing areas will be essential to maintain profitability in the coming years.
