The progress in sweet cherry (Prunus avium L.) breeding has been marked by the identification of molecular markers for crucial traits, utilizing genome sequencing for marker-assisted selection (MAS). Despite these achievements, quantitative trait locus (QTL) analyses have often lacked resolution, leading to missed gene associations.
Traditional breeding methods face challenges related to low efficiency and high costs. Recent developments in whole-genome sequencing have uncovered nearly 2 million single nucleotide polymorphisms (SNPs), promising higher marker density for genome-wide association studies (GWAS). However, uneven SNP distribution remains an obstacle, hindering the identification of candidate genes. The current hurdle is to leverage GWAS potential for high-resolution mapping to expedite the breeding of improved sweet cherry varieties.
Researchers employed paired-end sequencing on the Illumina NovaSeq 6000 platform, generating a 4.15-Tb sequence with samples contributing 7.6–36.8 Gb each. The extensive genome coverage allowed the identification of 1,767,106 high-quality SNPs distributed across the accessions. Principal component analysis (PCA) and Bayesian information criterion (BIC) indicated a homogeneous population without distinct genetic subgroups.
Phenotypic diversity assessed from 2012 to 2020 revealed significant variability across traits, with Collection of Genetic Resources (CGR) accessions displaying more pronounced diversity than breeding materials (BM). Notable differences in color traits and fruit size were observed, aligning with the goals of selective breeding.
Collection of Genetic Resources population structure analysis. A) Principal component (PC) analysis plot of the first two PCs identified from 235 accessions based on 1,767,106 single nucleotide polymorphisms. B) Heat map of a kinship matrix estimated using the VanRaden algorithm. Both plots were generated with GAPIT.
Source: EurekAlert!
Image: High-resolution genome-wide association study of a large Czech collection of sweet cherry (Prunus avium L.) on fruit maturity and quality traits - Scientific Figure on ResearchGate. https://www.researchgate.net/figure/Collection-of-Genetic-Resources-population-structure-analysis-A-Principal-component_fig1_364394570.
27 Apr 2023
With a turnover of over 60 million euro, Giacovelli srl is one of the leading producers and marketers of fruit and vegetables in Apulia. Its passion and specialisation for cherries makes it one of Italy's leading producers of the red summer fruit.
20 Jan 2025
Last year, extreme weather conditions and fires deeply affected this sector. The subsidies aim to mitigate the effects of adverse climatic factors that had a significant impact on the crop during the 2023 campaign.
14 Aug 2026
Poland’s Łutówka sour cherry harvest is nearing its end, while processors have raised prices only slightly. Growers say returns remain below production costs, raising concerns about the future of investment in orchards, modern machinery, crop protection and fertilisers.
14 Aug 2026
Interest in industrial cherry orchards is growing in Ukraine as demand, prices and mechanized harvesting shape growers’ decisions. Stable yields, regional competition and access to processing are becoming major factors for profitability and new investments in the sector.
