The progress in sweet cherry (Prunus avium L.) breeding has been marked by the identification of molecular markers for crucial traits, utilizing genome sequencing for marker-assisted selection (MAS). Despite these achievements, quantitative trait locus (QTL) analyses have often lacked resolution, leading to missed gene associations.
Traditional breeding methods face challenges related to low efficiency and high costs. Recent developments in whole-genome sequencing have uncovered nearly 2 million single nucleotide polymorphisms (SNPs), promising higher marker density for genome-wide association studies (GWAS). However, uneven SNP distribution remains an obstacle, hindering the identification of candidate genes. The current hurdle is to leverage GWAS potential for high-resolution mapping to expedite the breeding of improved sweet cherry varieties.
Researchers employed paired-end sequencing on the Illumina NovaSeq 6000 platform, generating a 4.15-Tb sequence with samples contributing 7.6–36.8 Gb each. The extensive genome coverage allowed the identification of 1,767,106 high-quality SNPs distributed across the accessions. Principal component analysis (PCA) and Bayesian information criterion (BIC) indicated a homogeneous population without distinct genetic subgroups.
Phenotypic diversity assessed from 2012 to 2020 revealed significant variability across traits, with Collection of Genetic Resources (CGR) accessions displaying more pronounced diversity than breeding materials (BM). Notable differences in color traits and fruit size were observed, aligning with the goals of selective breeding.
Collection of Genetic Resources population structure analysis. A) Principal component (PC) analysis plot of the first two PCs identified from 235 accessions based on 1,767,106 single nucleotide polymorphisms. B) Heat map of a kinship matrix estimated using the VanRaden algorithm. Both plots were generated with GAPIT.
Source: EurekAlert!
Image: High-resolution genome-wide association study of a large Czech collection of sweet cherry (Prunus avium L.) on fruit maturity and quality traits - Scientific Figure on ResearchGate. https://www.researchgate.net/figure/Collection-of-Genetic-Resources-population-structure-analysis-A-Principal-component_fig1_364394570.
12 Dec 2025
In the last decade, Chile turned cherries into a premium export worth over US$ 1.8 billion, driven by ideal climate, advanced technical management and booming Chinese demand. Andean areas of Peru show potential, but would require infrastructure and adapted strategies.
02 Jan 2025
Leptopilina japonica joins Ganaspis brasiliensis in the Fondazione Edmund Mach trial. Although Ganaspis brasiliensis remains the leading candidate, it is expected that the two insects can work synergistically to enhance control efficacy.
23 Jan 2026
Two clinical studies confirm that daily intake of concentrated tart cherry extracts significantly reduces inflammatory markers such as CRP and blood urate levels, opening new perspectives for the functional role of tart cherry in supporting long-term metabolic health.
23 Jan 2026
A study from Chile proves that controlled atmosphere with 10-15% CO2 and 10% O2 extends Regina cherries' shelf life up to 40 days while preserving quality and flavor—an effective solution to improve logistics for long-distance exports, especially to Asia.
