The progress in sweet cherry (Prunus avium L.) breeding has been marked by the identification of molecular markers for crucial traits, utilizing genome sequencing for marker-assisted selection (MAS). Despite these achievements, quantitative trait locus (QTL) analyses have often lacked resolution, leading to missed gene associations.
Traditional breeding methods face challenges related to low efficiency and high costs. Recent developments in whole-genome sequencing have uncovered nearly 2 million single nucleotide polymorphisms (SNPs), promising higher marker density for genome-wide association studies (GWAS). However, uneven SNP distribution remains an obstacle, hindering the identification of candidate genes. The current hurdle is to leverage GWAS potential for high-resolution mapping to expedite the breeding of improved sweet cherry varieties.
Researchers employed paired-end sequencing on the Illumina NovaSeq 6000 platform, generating a 4.15-Tb sequence with samples contributing 7.6–36.8 Gb each. The extensive genome coverage allowed the identification of 1,767,106 high-quality SNPs distributed across the accessions. Principal component analysis (PCA) and Bayesian information criterion (BIC) indicated a homogeneous population without distinct genetic subgroups.
Phenotypic diversity assessed from 2012 to 2020 revealed significant variability across traits, with Collection of Genetic Resources (CGR) accessions displaying more pronounced diversity than breeding materials (BM). Notable differences in color traits and fruit size were observed, aligning with the goals of selective breeding.
Collection of Genetic Resources population structure analysis. A) Principal component (PC) analysis plot of the first two PCs identified from 235 accessions based on 1,767,106 single nucleotide polymorphisms. B) Heat map of a kinship matrix estimated using the VanRaden algorithm. Both plots were generated with GAPIT.
Source: EurekAlert!
Image: High-resolution genome-wide association study of a large Czech collection of sweet cherry (Prunus avium L.) on fruit maturity and quality traits - Scientific Figure on ResearchGate. https://www.researchgate.net/figure/Collection-of-Genetic-Resources-population-structure-analysis-A-Principal-component_fig1_364394570.
03 Sep 2026
Dehydration affects cherry quality and shelf life after harvest. Controlling vapor pressure deficit (VPD), pulp temperature and relative humidity helps reduce water loss, preserve firmness and stem quality, limit cellular stress and extend the fruit’s postharvest life.
27 Mar 2025
Discover how Royal Tioga cherries are revolutionizing early-season fruit production in Murcia, Spain, with low chill requirements, high yield potential, and premium quality — attracting international interest.
12 Nov 2026
Rain, cold and low sunlight are complicating the cherry season in Chile. Walter Masman warns of risks to fruit quality and harvest. For Santina, further rain could cause losses of 15–20%: a hypothetical scenario that depends on weather forecasts over the next few weeks.
12 Nov 2026
Drosophila suzukii can infest healthy fruit, compromising quality and marketability. Timely treatments, monitoring, orchard sanitation and insecticide rotation help limit damage during harvest and reduce the risk of resistance. Learn when to start control measures.
