The progress in sweet cherry (Prunus avium L.) breeding has been marked by the identification of molecular markers for crucial traits, utilizing genome sequencing for marker-assisted selection (MAS). Despite these achievements, quantitative trait locus (QTL) analyses have often lacked resolution, leading to missed gene associations.
Traditional breeding methods face challenges related to low efficiency and high costs. Recent developments in whole-genome sequencing have uncovered nearly 2 million single nucleotide polymorphisms (SNPs), promising higher marker density for genome-wide association studies (GWAS). However, uneven SNP distribution remains an obstacle, hindering the identification of candidate genes. The current hurdle is to leverage GWAS potential for high-resolution mapping to expedite the breeding of improved sweet cherry varieties.
Researchers employed paired-end sequencing on the Illumina NovaSeq 6000 platform, generating a 4.15-Tb sequence with samples contributing 7.6–36.8 Gb each. The extensive genome coverage allowed the identification of 1,767,106 high-quality SNPs distributed across the accessions. Principal component analysis (PCA) and Bayesian information criterion (BIC) indicated a homogeneous population without distinct genetic subgroups.
Phenotypic diversity assessed from 2012 to 2020 revealed significant variability across traits, with Collection of Genetic Resources (CGR) accessions displaying more pronounced diversity than breeding materials (BM). Notable differences in color traits and fruit size were observed, aligning with the goals of selective breeding.
Collection of Genetic Resources population structure analysis. A) Principal component (PC) analysis plot of the first two PCs identified from 235 accessions based on 1,767,106 single nucleotide polymorphisms. B) Heat map of a kinship matrix estimated using the VanRaden algorithm. Both plots were generated with GAPIT.
Source: EurekAlert!
Image: High-resolution genome-wide association study of a large Czech collection of sweet cherry (Prunus avium L.) on fruit maturity and quality traits - Scientific Figure on ResearchGate. https://www.researchgate.net/figure/Collection-of-Genetic-Resources-population-structure-analysis-A-Principal-component_fig1_364394570.
30 May 2024
γ-aminobutyric acid regulates numerous physiological processes in plants. The University of Alicante monitored for two years the effects of foliar sprays of GABA at different concentrations at critical stages of fruit development in three sweet cherry cultivars.
08 Apr 2026
A study conducted in Cadriano, Bologna, investigates shading nets on Sweet Saretta cherry trees, showing improved plant water status, reduced vapor pressure deficit and enhanced physiological efficiency, with direct effects on fruit growth processes and overall quality.
01 Jun 2026
Lizard skin in cherries affects fruit appearance during cold storage and export transit. The Chilean study compares varieties, ripening stages and postharvest behavior, identifying the cultivars most exposed to damage, the most tolerant ones and key risks for local exports.
01 Jun 2026
Agrintesa and Gruppo Alegra strengthen the cherry supply chain between Vignola PGI and Romagna: over 400 hectares, protected orchards, technical innovation and post-harvest management to enhance premium quality, continuity and the work of Italian grower members across Italy.
