The progress in sweet cherry (Prunus avium L.) breeding has been marked by the identification of molecular markers for crucial traits, utilizing genome sequencing for marker-assisted selection (MAS). Despite these achievements, quantitative trait locus (QTL) analyses have often lacked resolution, leading to missed gene associations.
Traditional breeding methods face challenges related to low efficiency and high costs. Recent developments in whole-genome sequencing have uncovered nearly 2 million single nucleotide polymorphisms (SNPs), promising higher marker density for genome-wide association studies (GWAS). However, uneven SNP distribution remains an obstacle, hindering the identification of candidate genes. The current hurdle is to leverage GWAS potential for high-resolution mapping to expedite the breeding of improved sweet cherry varieties.
Researchers employed paired-end sequencing on the Illumina NovaSeq 6000 platform, generating a 4.15-Tb sequence with samples contributing 7.6–36.8 Gb each. The extensive genome coverage allowed the identification of 1,767,106 high-quality SNPs distributed across the accessions. Principal component analysis (PCA) and Bayesian information criterion (BIC) indicated a homogeneous population without distinct genetic subgroups.
Phenotypic diversity assessed from 2012 to 2020 revealed significant variability across traits, with Collection of Genetic Resources (CGR) accessions displaying more pronounced diversity than breeding materials (BM). Notable differences in color traits and fruit size were observed, aligning with the goals of selective breeding.
Collection of Genetic Resources population structure analysis. A) Principal component (PC) analysis plot of the first two PCs identified from 235 accessions based on 1,767,106 single nucleotide polymorphisms. B) Heat map of a kinship matrix estimated using the VanRaden algorithm. Both plots were generated with GAPIT.
Source: EurekAlert!
Image: High-resolution genome-wide association study of a large Czech collection of sweet cherry (Prunus avium L.) on fruit maturity and quality traits - Scientific Figure on ResearchGate. https://www.researchgate.net/figure/Collection-of-Genetic-Resources-population-structure-analysis-A-Principal-component_fig1_364394570.
09 Jan 2024
At the last Cherry Expo, ANA Chile researchers reported on the behaviour of some new early cherry varieties in Chile. Below are the main technical indications for producers and exporters that emerged during the Chilean symposium.
26 Jun 2026
A Tasmanian study examines how clear and opaque rain covers change orchard microclimate, light, leaf physiology and cherry quality, combining replicated field trials and grower case studies to help producers improve fruit performance, harvest timing and storage potential.
05 Nov 2026
Argentina’s cherry season is expected to start 5 to 15 days late. If weather conditions are favorable, exports could approach 8,500 tonnes, with annual growth forecast at 10%. The first shipments to international markets are expected between late October and early November.
05 Nov 2026
Moldova and Uzbekistan show different paths for cherry exports. Moldova expanded markets and increased revenues after 2022, while Uzbekistan concentrated sales in Russia. Ukraine’s experience highlights why investment and market diversification matter for competitiveness.
